Illumina amplicon sequencing of metagenomic paired-end library 'Solex... - SRA

SRX951748: Illumina amplicon sequencing of metagenomic paired-end library 'Solexa-156258' containing sample '3115087' from individual 'E010629'
1 ILLUMINA (Illumina MiSeq) run: 154,205 spots, 54M bases, 36Mb downloads

UUID: 576ae8d1-53af-41e6-a6d4-fa71e9f62af6

Design: Illumina sequencing of human gut metagenome via polymerase chain reaction

Submitted by: Broad Institute (BI)

Study: A prospective, longitudinal analysis of the developing gut microbiome in infants en route to type 1 diabetes

PRJNA231909 • SRP056054 • All experiments • All runs

show Abstracthide Abstract

This is a prospective, longitudinal collection of stool samples from infants at risk for disease. Infants from Finland and Estonia were recruited at birth based on HLA risk genotyping. Parents collected their infants' stool at approximately monthly intervals and promptly stored the sample in the freezer prior to shipment for sample processing and sequencing. The cohort comprised of 33 infants, 11 of which seroconverted to serum autoantibody positivity and of those, four developed T1D within the three year time-frame of this study.

Sample: Generic sample from human gut metagenome

SAMN03399905 • SRS871624 • All experiments • All runs

Organism: human gut metagenome

Library:

Name: Solexa-156258

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Spot descriptor:

1 forward176 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: 16S

gssr_id: 321250.0

library_type: 16S

lsid: broadinstitute.org:bsp.prod.sample:4BFKQ

material_type: DNA:DNA Genomic

product_order: PDO-1090

product_part_number: P-MCV-0002

project: G35984

research_project: RP-315

root_sample_id: SM-3T2AH

sample_id: SM-4BFKQ

work_request: 36338

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-01 22:15:31.0	GAPipeline	RTA1.17.28	Sequencer Application 2.2.0

Runs: 1 run, 154,205 spots, 54M bases, 36Mb

Run	# of Spots	# of Bases	Size	Published
SRR1910115	154,205	54M	36Mb	2015-03-11

ID:: 1351723

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